stonpy.completion module

The module for completing subgraphs to form complete subgraphs that can be converted to SBGN maps.

stonpy.completion.complete_subgraph(subgraph, db_graph, complete_process_modulations=False)[source]

Complete a subgraph w.r.t to a graph and returns it.

See Completion algorithm for more details.

Parameters:

  • subgraph (py2neo.Subgraph) – the subgraph to complete

  • db_graph (py2neo.Graph) – the neo4j graph where to look for the completion

  • complete_process_modulations (bool) – option to complete processes with the modulations targetting it, default is False

Returns:

the completed subgraph

Return type:

py2neo.Subgraph