ER

Nodes

Absolute inhibition

Labels

• AbsoluteInhibition
• Inhibition
• Modulation
• Relationship
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_CARDINALITY-(1)-> Cardinality
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map or InteractionArcgroup-(1)-HAS_ARC-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_INHIBITS-(*)-> .

Absolute stimulation

Labels

• AbsoluteStimulation
• Stimulation
• Modulation
• Relationship
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_CARDINALITY-(1)-> Cardinality
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map or InteractionArcgroup-(1)-HAS_ARC-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_INHIBITS-(*)-> .

And operator

Labels

• AndOperator
• LogicalOperator
• EntityNode
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]
• . -(*)-HAS_INPUT-(*)-> [...]
• . -(*)-ABSOLUTE_STIMULATES-(*)-> [...]
• . -(*)-ABSOLUTE_INHIBITS-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Annotation (SBML style)

Labels

• Annotation

Attributes

• qualifier_uri: str
• qualifier_ns: str
• qualifier: str

Relationships

• . -(1)-HAS_RESOURCE-(*)-> Resource

• [...]-(1)-HAS_ANNOTATION-(*)-> .

Comments

See SBML documentation

Assignment

Labels

• Assignment
• Statement
• Relationship
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_OUTCOME-(*)-> Outcome
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map or InteractionArcgroup-(1)-HAS_ARC-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_INHIBITS-(*)-> .

Bbox

Labels

• Bbox

Attributes

• x: float
• y: float
• w: float
• h: float

Relationships

• [...]-(1)-HAS_BBOX-(1)-> .

Cardinality

Labels

• Cardinality
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• [...]-(1)-HAS_CARDINALITY-(1)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Delay

Labels

• DelayOperator
• LogicalOperator
• EntityNode
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]
• . -(*)-HAS_INPUT-(*)-> [...]
• . -(*)-ABSOLUTE_STIMULATES-(*)-> [...]
• . -(*)-ABSOLUTE_INHIBITS-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

End

Labels

• End

Attributes

• x: float
• y: float

Relationships

• [...]-(1)-HAS_END-(1)-> .

Entity

Labels

• Entity
• Interactor
• EntityNode
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable or Location or Existence
• . -(1)-HAS_LOCATION-(1)-> Location
• . -(1)-HAS_EXISTENCE-(1)-> Existence
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]
• . -(*)-INTERACTS_WITH-(*)-> Entity
• . -(*)-ABSOLUTE_STIMULATES-(*)-> [...]
• . -(*)-ABSOLUTE_INHIBITS-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .
• Entity-(*)-INTERACTS_WITH-(*)-> .

Existence

Labels

• Existence
• StateVariable
• AuxilliaryUnit
• Glyph

Attributes

• value: str
• variable: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Entity-(1)-HAS_STATE_VARIABLE-(*)-> .
• Entity-(1)-HAS_EXISTENCE-(1)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• VariableValue-(*)-IS_ASSIGNED_TO-(1)-> .

Implicit xor

Labels

• ImplicitXor
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Comments

For compatibility with old versions of ER maps

Inhibition

Labels

• Inhibition
• Modulation
• Relationship
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_CARDINALITY-(1)-> Cardinality
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map or InteractionArcgroup-(1)-HAS_ARC-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_INHIBITS-(*)-> .

Interaction

Labels

• Interaction
• Statement
• Relationship
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_OUTCOME-(*)-> Outcome
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map or InteractionArcgroup-(1)-HAS_ARC-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_INHIBITS-(*)-> .

Interaction arcgroup

Labels

• InteractionArcgroup
• Arcgroup

Attributes

• notes: str
• extension: str
• id: str
• class: ArcGroupType

Relationships

• . -(1)-HAS_ARC-(*)-> [...]

• Map-(1)-HAS_ARCGROUP-(*)-> .

Interaction glyph

Labels

• InteractionGlyph
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_OUTCOME-(*)-> Outcome
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Label

Labels

• Label

Attributes

• text: str

Relationships

Location

Labels

• Location
• StateVariable
• AuxilliaryUnit
• Glyph

Attributes

• value: str
• variable: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Entity-(1)-HAS_STATE_VARIABLE-(*)-> .
• Entity-(1)-HAS_LOCATION-(1)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• VariableValue-(*)-IS_ASSIGNED_TO-(1)-> .

Logic arc

Labels

• LogicArc
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map or InteractionArcgroup-(1)-HAS_ARC-(*)-> .

Map

Labels

• Map

Attributes

• notes: str
• extension: str
• id: str
• language: Language

Relationships

• . -(1)-HAS_GLYPH-(*)-> [...]
• . -(1)-HAS_ARC-(*)-> [...]
• . -(1)-HAS_ARCGROUP-(*)-> InteractionArcgroup
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

Necessary stimulation

Labels

• NecessaryStimulation
• Stimulation
• Modulation
• Relationship
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_CARDINALITY-(1)-> Cardinality
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map or InteractionArcgroup-(1)-HAS_ARC-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_INHIBITS-(*)-> .

Next

Labels

• Next

Attributes

• x: float
• y: float
• order: int

Relationships

• [...]-(1)-HAS_NEXT-(*)-> .

Not operator

Labels

• NotOperator
• LogicalOperator
• EntityNode
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]
• . -(*)-HAS_INPUT-(*)-> [...]
• . -(*)-ABSOLUTE_STIMULATES-(*)-> [...]
• . -(*)-ABSOLUTE_INHIBITS-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Or operator

Labels

• OrOperator
• LogicalOperator
• EntityNode
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]
• . -(*)-HAS_INPUT-(*)-> [...]
• . -(*)-ABSOLUTE_STIMULATES-(*)-> [...]
• . -(*)-ABSOLUTE_INHIBITS-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Outcome

Labels

• Outcome
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• InteractionGlyph or Assignment or Interaction-(1)-HAS_OUTCOME-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Perturbing agent

Labels

• PerturbingAgent
• EntityNode
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]
• . -(*)-ABSOLUTE_STIMULATES-(*)-> [...]
• . -(*)-ABSOLUTE_INHIBITS-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Port

Labels

• Port

Attributes

• id: str
• x: float
• y: float

Relationships

• [...]-(1)-HAS_PORT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .

Resource (inside SBML style annotation)

Labels

• Resource

Attributes

• id: str
• uri: str
• collection_ns: str

Relationships

• Annotation-(1)-HAS_RESOURCE-(*)-> .

Comments

See SBML documentation

Start

Labels

• Start

Attributes

• x: float
• y: float

Relationships

• [...]-(1)-HAS_START-(1)-> .

State variable

Labels

• StateVariable
• AuxilliaryUnit
• Glyph

Attributes

• value: str
• variable: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Entity-(1)-HAS_STATE_VARIABLE-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• VariableValue-(*)-IS_ASSIGNED_TO-(1)-> .

Stimulation

Labels

• Stimulation
• Modulation
• Relationship
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_CARDINALITY-(1)-> Cardinality
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map or InteractionArcgroup-(1)-HAS_ARC-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_STIMULATES-(*)-> .
• [...]-(*)-ABSOLUTE_INHIBITS-(*)-> .

Submap

Labels

• Submap
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_TERMINAL-(*)-> Terminal
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Tag

Labels

• Tag
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Terminal

Labels

• Terminal
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Submap-(1)-HAS_TERMINAL-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Unit of information

Labels

• UnitOfInformation
• AuxilliaryUnit
• Glyph

Attributes

• prefix: str
• value: str
• type: EntityType (AF only)
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Entity-(1)-HAS_UNIT_OF_INFORMATION-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Variable value

Labels

• VariableValue
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-IS_ASSIGNED_TO-(1)-> StateVariable or Location or Existence

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Relationships

HAS_STATE_VARIABLE

Type

• HAS_STATE_VARIABLE

Source arity

• 1

Source types

• Entity

Target arity

• 1

Target types

• StateVariable
• Location
• Existence

HAS_LOCATION

Type

• HAS_LOCATION

Source arity

• 1

Source types

• Entity

Target arity

• 1

Target types

• Location

HAS_EXISTENCE

Type

• HAS_EXISTENCE

Source arity

• 1

Source types

• Entity

Target arity

• 1

Target types

• Existence

HAS_UNIT_OF_INFORMATION

Type

• HAS_UNIT_OF_INFORMATION

Source arity

• 1

Source types

• Entity

Target arity

• 1

Target types

• UnitOfInformation

HAS_PORT

Type

• HAS_PORT

Source arity

• 1

Source types

• UnitOfInformation
• StateVariable
• Location
• Existence
• Cardinality
• Terminal
• Outcome
• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent
• InteractionGlyph
• VariableValue
• Submap
• Tag
• ImplicitXor
• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition
• LogicArc

Target arity

• 1

Target types

• Port

HAS_BBOX

Type

• HAS_BBOX

Source arity

• 1

Source types

• UnitOfInformation
• StateVariable
• Location
• Existence
• Cardinality
• Terminal
• Outcome
• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent
• InteractionGlyph
• VariableValue
• Submap
• Tag
• ImplicitXor

Target arity

• 1

Target types

• Bbox

HAS_TERMINAL

Type

• HAS_TERMINAL

Source arity

• 1

Source types

• Submap

Target arity

• 1

Target types

• Terminal

HAS_CARDINALITY

Type

• HAS_CARDINALITY

Source arity

• 1

Source types

• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition

Target arity

• 1

Target types

• Cardinality

HAS_OUTCOME

Type

• HAS_OUTCOME

Source arity

• 1

Source types

• InteractionGlyph
• Assignment
• Interaction

Target arity

• 1

Target types

• Outcome

HAS_SOURCE

Type

• HAS_SOURCE

Source arity

• 1

Source types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition
• LogicArc

Target arity

• 1

Target types

• UnitOfInformation
• StateVariable
• Location
• Existence
• Cardinality
• Terminal
• Outcome
• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent
• InteractionGlyph
• VariableValue
• Submap
• Tag
• ImplicitXor
• Port

HAS_TARGET

Type

• HAS_TARGET

Source arity

• 1

Source types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition
• LogicArc

Target arity

• 1

Target types

• UnitOfInformation
• StateVariable
• Location
• Existence
• Cardinality
• Terminal
• Outcome
• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent
• InteractionGlyph
• VariableValue
• Submap
• Tag
• ImplicitXor
• Port

HAS_START

Type

• HAS_START

Source arity

• 1

Source types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition
• LogicArc

Target arity

• 1

Target types

• Start

HAS_END

Type

• HAS_END

Source arity

• 1

Source types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition
• LogicArc

Target arity

• 1

Target types

• End

HAS_NEXT

Type

• HAS_NEXT

Source arity

• 1

Source types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition
• LogicArc

Target arity

• 1

Target types

• Next

HAS_GLYPH

Type

• HAS_GLYPH

Source arity

• 1

Source types

• Map

Target arity

• 1

Target types

• UnitOfInformation
• StateVariable
• Location
• Existence
• Cardinality
• Terminal
• Outcome
• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent
• InteractionGlyph
• VariableValue
• Submap
• Tag
• ImplicitXor

HAS_ARC

Type

• HAS_ARC

Source arity

• 1

Source types

• Map
• InteractionArcgroup

Target arity

• 1

Target types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition
• LogicArc

HAS_ARCGROUP

Type

• HAS_ARCGROUP

Source arity

• 1

Source types

• Map

Target arity

• 1

Target types

• InteractionArcgroup

HAS_RESOURCE

Type

• HAS_RESOURCE

Source arity

• 1

Source types

• Annotation

Target arity

• 1

Target types

• Resource

HAS_ANNOTATION

Type

• HAS_ANNOTATION

Source arity

• 1

Source types

• Map
• UnitOfInformation
• StateVariable
• Location
• Existence
• Cardinality
• Terminal
• Outcome
• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent
• InteractionGlyph
• VariableValue
• Submap
• Tag
• ImplicitXor
• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition
• LogicArc

Target arity

• 1

Target types

• Annotation

MODULATES

Type

• MODULATES

Source arity

• any

Source types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent

Target arity

• any

Target types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition

STIMULATES

Type

• STIMULATES

Source arity

• any

Source types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent

Target arity

• any

Target types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition

INHIBITS

Type

• INHIBITS

Source arity

• any

Source types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent

Target arity

• any

Target types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition

NECESSARY_STIMULATES

Type

• NECESSARY_STIMULATES

Source arity

• any

Source types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent

Target arity

• any

Target types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition

HAS_INPUT

Type

• HAS_INPUT

Source arity

• any

Source types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator

Target arity

• any

Target types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent

IS_ASSIGNED_TO

Type

• IS_ASSIGNED_TO

Source arity

• any

Source types

• VariableValue

Target arity

• any

Target types

• StateVariable
• Location
• Existence

INTERACTS_WITH

Type

• INTERACTS_WITH

Source arity

• any

Source types

• Entity

Target arity

• any

Target types

• Entity

ABSOLUTE_STIMULATES

Type

• ABSOLUTE_STIMULATES

Source arity

• any

Source types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent

Target arity

• any

Target types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition

ABSOLUTE_INHIBITS

Type

• ABSOLUTE_INHIBITS

Source arity

• any

Source types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• Entity
• PerturbingAgent

Target arity

• any

Target types

• Assignment
• Interaction
• Stimulation
• NecessaryStimulation
• AbsoluteStimulation
• Inhibition
• AbsoluteInhibition