PD

Nodes

And operator

Labels

• AndOperator
• LogicalOperator
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]
• . -(*)-HAS_INPUT-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Annotation (SBML style)

Labels

• Annotation

Attributes

• qualifier_uri: str
• qualifier_ns: str
• qualifier: str

Relationships

• . -(1)-HAS_RESOURCE-(*)-> Resource

• [...]-(1)-HAS_ANNOTATION-(*)-> .

Comments

See SBML documentation

Association

Labels

• Association
• StoichiometricProcess
• Process
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CONSUMES-(*)-> [...]
• . -(*)-PRODUCES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CATALYZES-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .

Bbox

Labels

• Bbox

Attributes

• x: float
• y: float
• w: float
• h: float

Relationships

• [...]-(1)-HAS_BBOX-(1)-> .

Cardinality

Labels

• Cardinality
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Consumption or Production-(1)-HAS_CARDINALITY-(1)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Catalysis

Labels

• Catalysis
• Stimulation
• Modulation
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map-(1)-HAS_ARC-(*)-> .

Compartment

Labels

• Compartment
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• [...]-(*)-IS_IN_COMPARTMENT-(1)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Complex

Labels

• Complex
• Epn
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_SUBUNIT-(*)-> [...]
• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(*)-IS_IN_COMPARTMENT-(1)-> Compartment
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CONSUMES-(*)-> .
• [...]-(*)-PRODUCES-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Complex multimer

Labels

• ComplexMultimer
• Multimer
• Epn
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(*)-IS_IN_COMPARTMENT-(1)-> Compartment
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CONSUMES-(*)-> .
• [...]-(*)-PRODUCES-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Complex multimer subunit

Labels

• ComplexMultimerSubunit
• Subunit
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Complex-(1)-HAS_SUBUNIT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Complex subunit

Labels

• ComplexSubunit
• Subunit
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Complex-(1)-HAS_SUBUNIT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Consumption

Labels

• Consumption
• FluxArc
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_CARDINALITY-(1)-> Cardinality
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map-(1)-HAS_ARC-(*)-> .

Delay

Labels

• DelayOperator
• LogicalOperator
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]
• . -(*)-HAS_INPUT-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Dissociation

Labels

• Dissociation
• StoichiometricProcess
• Process
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CONSUMES-(*)-> [...]
• . -(*)-PRODUCES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CATALYZES-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .

Empty set

Labels

• EmptySet
• Epn
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(*)-IS_IN_COMPARTMENT-(1)-> Compartment
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CONSUMES-(*)-> .
• [...]-(*)-PRODUCES-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

End

Labels

• End

Attributes

• x: float
• y: float

Relationships

• [...]-(1)-HAS_END-(1)-> .

Equivalence arc

Labels

• EquivalenceArc
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map-(1)-HAS_ARC-(*)-> .

Equivalence operator

Labels

• EquivalenceOperator
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-HAS_INPUT-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Generic process

Labels

• GenericProcess
• StoichiometricProcess
• Process
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CONSUMES-(*)-> [...]
• . -(*)-PRODUCES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CATALYZES-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .

Inhibition

Labels

• Inhibition
• Modulation
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map-(1)-HAS_ARC-(*)-> .

Label

Labels

• Label

Attributes

• text: str

Relationships

Logic arc

Labels

• LogicArc
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map-(1)-HAS_ARC-(*)-> .

Macromolecule

Labels

• Macromolecule
• Epn
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(*)-IS_IN_COMPARTMENT-(1)-> Compartment
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CONSUMES-(*)-> .
• [...]-(*)-PRODUCES-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Macromolecule multimer

Labels

• MacromoleculeMultimer
• Multimer
• Epn
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(*)-IS_IN_COMPARTMENT-(1)-> Compartment
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CONSUMES-(*)-> .
• [...]-(*)-PRODUCES-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Macromolecule multimer subunit

Labels

• MacromoleculeMultimerSubunit
• Subunit
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Complex-(1)-HAS_SUBUNIT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Macromolecule subunit

Labels

• MacromoleculeSubunit
• Subunit
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Complex-(1)-HAS_SUBUNIT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Map

Labels

• Map

Attributes

• notes: str
• extension: str
• id: str
• language: Language

Relationships

• . -(1)-HAS_GLYPH-(*)-> [...]
• . -(1)-HAS_ARC-(*)-> [...]
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

Modulation

Labels

• Modulation
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map-(1)-HAS_ARC-(*)-> .

Necessary stimulation

Labels

• NecessaryStimulation
• Stimulation
• Modulation
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map-(1)-HAS_ARC-(*)-> .

Next

Labels

• Next

Attributes

• x: float
• y: float
• order: int

Relationships

• [...]-(1)-HAS_NEXT-(*)-> .

Not operator

Labels

• NotOperator
• LogicalOperator
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]
• . -(*)-HAS_INPUT-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Nucleic acid feature

Labels

• NucleicAcidFeature
• Epn
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(*)-IS_IN_COMPARTMENT-(1)-> Compartment
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CONSUMES-(*)-> .
• [...]-(*)-PRODUCES-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Nucleic acid feature multimer

Labels

• NucleicAcidFeatureMultimer
• Multimer
• Epn
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(*)-IS_IN_COMPARTMENT-(1)-> Compartment
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CONSUMES-(*)-> .
• [...]-(*)-PRODUCES-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Nucleic acid feature multimer subunit

Labels

• NucleicAcidFeatureMultimerSubunit
• Subunit
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Complex-(1)-HAS_SUBUNIT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Nucleic acid feature subunit

Labels

• NucleicAcidFeatureSubunit
• Subunit
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Complex-(1)-HAS_SUBUNIT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Omitted process

Labels

• OmittedProcess
• StoichiometricProcess
• Process
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CONSUMES-(*)-> [...]
• . -(*)-PRODUCES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CATALYZES-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .

Or operator

Labels

• OrOperator
• LogicalOperator
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]
• . -(*)-HAS_INPUT-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Perturbing agent

Labels

• PerurbingAgent
• Epn
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(*)-IS_IN_COMPARTMENT-(1)-> Compartment
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CONSUMES-(*)-> .
• [...]-(*)-PRODUCES-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Phenotype

Labels

• Phenotype
• Process
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CATALYZES-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .

Phenotype subunit

Labels

• PhenotypeSubunit
• Subunit
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Complex-(1)-HAS_SUBUNIT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Comments

For compatibility with some CellDesigner maps

Port

Labels

• Port

Attributes

• id: str
• x: float
• y: float

Relationships

• [...]-(1)-HAS_PORT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .

Production

Labels

• Production
• FluxArc
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_CARDINALITY-(1)-> Cardinality
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map-(1)-HAS_ARC-(*)-> .

Resource (inside SBML style annotation)

Labels

• Resource

Attributes

• id: str
• uri: str
• collection_ns: str

Relationships

• Annotation-(1)-HAS_RESOURCE-(*)-> .

Comments

See SBML documentation

Simple chemical

Labels

• SimpleChemical
• Epn
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(*)-IS_IN_COMPARTMENT-(1)-> Compartment
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CONSUMES-(*)-> .
• [...]-(*)-PRODUCES-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Simple chemical multimer

Labels

• SimpleChemicalMultimer
• Multimer
• Epn
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(*)-IS_IN_COMPARTMENT-(1)-> Compartment
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CONSUMES-(*)-> .
• [...]-(*)-PRODUCES-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Simple chemical multimer subunit

Labels

• SimpleChemicalMultimerSubunit
• Subunit
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Complex-(1)-HAS_SUBUNIT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Simple chemical subunit

Labels

• SimpleChemicalSubunit
• Subunit
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Complex-(1)-HAS_SUBUNIT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Start

Labels

• Start

Attributes

• x: float
• y: float

Relationships

• [...]-(1)-HAS_START-(1)-> .

State variable

Labels

• StateVariable
• AuxilliaryUnit
• Glyph

Attributes

• value: str
• variable: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• [...]-(1)-HAS_STATE_VARIABLE-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Stimulation

Labels

• Stimulation
• Modulation
• Arc

Attributes

• notes: str
• extension: str
• id: str
• class: ArcClass

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_SOURCE-(1)-> [...]
• . -(1)-HAS_TARGET-(1)-> [...]
• . -(1)-HAS_START-(1)-> Start
• . -(1)-HAS_END-(1)-> End
• . -(1)-HAS_NEXT-(*)-> Next
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Map-(1)-HAS_ARC-(*)-> .

Submap

Labels

• Submap
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_TERMINAL-(*)-> Terminal
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Tag

Labels

• Tag
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Terminal

Labels

• Terminal
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Submap-(1)-HAS_TERMINAL-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Uncertain process

Labels

• UncertainProcess
• StoichiometricProcess
• Process
• Glyph

Attributes

• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CONSUMES-(*)-> [...]
• . -(*)-PRODUCES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CATALYZES-(*)-> .
• [...]-(*)-MODULATES-(*)-> .
• [...]-(*)-STIMULATES-(*)-> .
• [...]-(*)-INHIBITS-(*)-> .
• [...]-(*)-NECESSARY_STIMULATES-(*)-> .

Unit of information

Labels

• UnitOfInformation
• AuxilliaryUnit
• Glyph

Attributes

• prefix: str
• value: str
• type: EntityType (AF only)
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• [...]-(1)-HAS_UNIT_OF_INFORMATION-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Unspecified entity

Labels

• UnspecifiedEntity
• Epn
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_STATE_VARIABLE-(*)-> StateVariable
• . -(1)-HAS_UNIT_OF_INFORMATION-(*)-> UnitOfInformation
• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(*)-IS_IN_COMPARTMENT-(1)-> Compartment
• . -(1)-HAS_ANNOTATION-(*)-> Annotation
• . -(*)-CATALYZES-(*)-> [...]
• . -(*)-MODULATES-(*)-> [...]
• . -(*)-STIMULATES-(*)-> [...]
• . -(*)-INHIBITS-(*)-> [...]
• . -(*)-NECESSARY_STIMULATES-(*)-> [...]

• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .
• [...]-(*)-CONSUMES-(*)-> .
• [...]-(*)-PRODUCES-(*)-> .
• [...]-(*)-HAS_INPUT-(*)-> .

Unspecified entity subunit

Labels

• UnspecifiedEntitySubunit
• Subunit
• AuxilliaryUnit
• Glyph

Attributes

• label: str
• notes: str
• extension: str
• id: str
• class: GlyphClass
• clone: bool
• clone_label: str
• compartmentOrder: float
• oritentation: Orientation

Relationships

• . -(1)-HAS_PORT-(*)-> Port
• . -(1)-HAS_BBOX-(1)-> Bbox
• . -(1)-HAS_ANNOTATION-(*)-> Annotation

• Complex-(1)-HAS_SUBUNIT-(*)-> .
• [...]-(1)-HAS_SOURCE-(1)-> .
• [...]-(1)-HAS_TARGET-(1)-> .
• Map-(1)-HAS_GLYPH-(*)-> .

Relationships

HAS_SUBUNIT

Type

• HAS_SUBUNIT

Source arity

• 1

Source types

• Complex

Target arity

• 1

Target types

• UnspecifiedEntitySubunit
• SimpleChemicalSubunit
• MacromoleculeSubunit
• NucleicAcidFeatureSubunit
• ComplexSubunit
• SimpleChemicalMultimerSubunit
• MacromoleculeMultimerSubunit
• NucleicAcidFeatureMultimerSubunit
• ComplexMultimerSubunit
• PhenotypeSubunit

HAS_STATE_VARIABLE

Type

• HAS_STATE_VARIABLE

Source arity

• 1

Source types

• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer

Target arity

• 1

Target types

• StateVariable

HAS_UNIT_OF_INFORMATION

Type

• HAS_UNIT_OF_INFORMATION

Source arity

• 1

Source types

• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer

Target arity

• 1

Target types

• UnitOfInformation

HAS_PORT

Type

• HAS_PORT

Source arity

• 1

Source types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• EquivalenceOperator
• Compartment
• UnitOfInformation
• StateVariable
• Cardinality
• Terminal
• UnspecifiedEntitySubunit
• SimpleChemicalSubunit
• MacromoleculeSubunit
• NucleicAcidFeatureSubunit
• ComplexSubunit
• SimpleChemicalMultimerSubunit
• MacromoleculeMultimerSubunit
• NucleicAcidFeatureMultimerSubunit
• ComplexMultimerSubunit
• PhenotypeSubunit
• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation
• Phenotype
• Submap
• Tag
• Modulation
• Stimulation
• Catalysis
• NecessaryStimulation
• Inhibition
• Consumption
• Production
• LogicArc
• EquivalenceArc

Target arity

• 1

Target types

• Port

HAS_BBOX

Type

• HAS_BBOX

Source arity

• 1

Source types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• EquivalenceOperator
• Compartment
• UnitOfInformation
• StateVariable
• Cardinality
• Terminal
• UnspecifiedEntitySubunit
• SimpleChemicalSubunit
• MacromoleculeSubunit
• NucleicAcidFeatureSubunit
• ComplexSubunit
• SimpleChemicalMultimerSubunit
• MacromoleculeMultimerSubunit
• NucleicAcidFeatureMultimerSubunit
• ComplexMultimerSubunit
• PhenotypeSubunit
• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation
• Phenotype
• Submap
• Tag

Target arity

• 1

Target types

• Bbox

HAS_TERMINAL

Type

• HAS_TERMINAL

Source arity

• 1

Source types

• Submap

Target arity

• 1

Target types

• Terminal

IS_IN_COMPARTMENT

Type

• IS_IN_COMPARTMENT

Source arity

• any

Source types

• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer

Target arity

• any

Target types

• Compartment

HAS_CARDINALITY

Type

• HAS_CARDINALITY

Source arity

• 1

Source types

• Consumption
• Production

Target arity

• 1

Target types

• Cardinality

HAS_SOURCE

Type

• HAS_SOURCE

Source arity

• 1

Source types

• Modulation
• Stimulation
• Catalysis
• NecessaryStimulation
• Inhibition
• Consumption
• Production
• LogicArc
• EquivalenceArc

Target arity

• 1

Target types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• EquivalenceOperator
• Compartment
• UnitOfInformation
• StateVariable
• Cardinality
• Terminal
• UnspecifiedEntitySubunit
• SimpleChemicalSubunit
• MacromoleculeSubunit
• NucleicAcidFeatureSubunit
• ComplexSubunit
• SimpleChemicalMultimerSubunit
• MacromoleculeMultimerSubunit
• NucleicAcidFeatureMultimerSubunit
• ComplexMultimerSubunit
• PhenotypeSubunit
• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation
• Phenotype
• Submap
• Tag
• Port

HAS_TARGET

Type

• HAS_TARGET

Source arity

• 1

Source types

• Modulation
• Stimulation
• Catalysis
• NecessaryStimulation
• Inhibition
• Consumption
• Production
• LogicArc
• EquivalenceArc

Target arity

• 1

Target types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• EquivalenceOperator
• Compartment
• UnitOfInformation
• StateVariable
• Cardinality
• Terminal
• UnspecifiedEntitySubunit
• SimpleChemicalSubunit
• MacromoleculeSubunit
• NucleicAcidFeatureSubunit
• ComplexSubunit
• SimpleChemicalMultimerSubunit
• MacromoleculeMultimerSubunit
• NucleicAcidFeatureMultimerSubunit
• ComplexMultimerSubunit
• PhenotypeSubunit
• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation
• Phenotype
• Submap
• Tag
• Port

HAS_START

Type

• HAS_START

Source arity

• 1

Source types

• Modulation
• Stimulation
• Catalysis
• NecessaryStimulation
• Inhibition
• Consumption
• Production
• LogicArc
• EquivalenceArc

Target arity

• 1

Target types

• Start

HAS_END

Type

• HAS_END

Source arity

• 1

Source types

• Modulation
• Stimulation
• Catalysis
• NecessaryStimulation
• Inhibition
• Consumption
• Production
• LogicArc
• EquivalenceArc

Target arity

• 1

Target types

• End

HAS_NEXT

Type

• HAS_NEXT

Source arity

• 1

Source types

• Modulation
• Stimulation
• Catalysis
• NecessaryStimulation
• Inhibition
• Consumption
• Production
• LogicArc
• EquivalenceArc

Target arity

• 1

Target types

• Next

HAS_GLYPH

Type

• HAS_GLYPH

Source arity

• 1

Source types

• Map

Target arity

• 1

Target types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• EquivalenceOperator
• Compartment
• UnitOfInformation
• StateVariable
• Cardinality
• Terminal
• UnspecifiedEntitySubunit
• SimpleChemicalSubunit
• MacromoleculeSubunit
• NucleicAcidFeatureSubunit
• ComplexSubunit
• SimpleChemicalMultimerSubunit
• MacromoleculeMultimerSubunit
• NucleicAcidFeatureMultimerSubunit
• ComplexMultimerSubunit
• PhenotypeSubunit
• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation
• Phenotype
• Submap
• Tag

HAS_ARC

Type

• HAS_ARC

Source arity

• 1

Source types

• Map

Target arity

• 1

Target types

• Modulation
• Stimulation
• Catalysis
• NecessaryStimulation
• Inhibition
• Consumption
• Production
• LogicArc
• EquivalenceArc

HAS_RESOURCE

Type

• HAS_RESOURCE

Source arity

• 1

Source types

• Annotation

Target arity

• 1

Target types

• Resource

HAS_ANNOTATION

Type

• HAS_ANNOTATION

Source arity

• 1

Source types

• Map
• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• EquivalenceOperator
• Compartment
• UnitOfInformation
• StateVariable
• Cardinality
• Terminal
• UnspecifiedEntitySubunit
• SimpleChemicalSubunit
• MacromoleculeSubunit
• NucleicAcidFeatureSubunit
• ComplexSubunit
• SimpleChemicalMultimerSubunit
• MacromoleculeMultimerSubunit
• NucleicAcidFeatureMultimerSubunit
• ComplexMultimerSubunit
• PhenotypeSubunit
• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation
• Phenotype
• Submap
• Tag
• Modulation
• Stimulation
• Catalysis
• NecessaryStimulation
• Inhibition
• Consumption
• Production
• LogicArc
• EquivalenceArc

Target arity

• 1

Target types

• Annotation

CATALYZES

Type

• CATALYZES

Source arity

• any

Source types

• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• OrOperator
• AndOperator
• NotOperator
• DelayOperator

Target arity

• any

Target types

• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation
• Phenotype

MODULATES

Type

• MODULATES

Source arity

• any

Source types

• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• OrOperator
• AndOperator
• NotOperator
• DelayOperator

Target arity

• any

Target types

• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation
• Phenotype

STIMULATES

Type

• STIMULATES

Source arity

• any

Source types

• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• OrOperator
• AndOperator
• NotOperator
• DelayOperator

Target arity

• any

Target types

• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation
• Phenotype

INHIBITS

Type

• INHIBITS

Source arity

• any

Source types

• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• OrOperator
• AndOperator
• NotOperator
• DelayOperator

Target arity

• any

Target types

• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation
• Phenotype

NECESSARY_STIMULATES

Type

• NECESSARY_STIMULATES

Source arity

• any

Source types

• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• OrOperator
• AndOperator
• NotOperator
• DelayOperator

Target arity

• any

Target types

• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation
• Phenotype

CONSUMES

Type

• CONSUMES

Source arity

• any

Source types

• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation

Target arity

• any

Target types

• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer

PRODUCES

Type

• PRODUCES

Source arity

• any

Source types

• GenericProcess
• OmittedProcess
• UncertainProcess
• Association
• Dissociation

Target arity

• any

Target types

• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer

HAS_INPUT

Type

• HAS_INPUT

Source arity

• any

Source types

• OrOperator
• AndOperator
• NotOperator
• DelayOperator
• EquivalenceOperator

Target arity

• any

Target types

• UnspecifiedEntity
• SimpleChemical
• Macromolecule
• NucleicAcidFeature
• Complex
• EmptySet
• PerurbingAgent
• SimpleChemicalMultimer
• MacromoleculeMultimer
• NucleicAcidFeatureMultimer
• ComplexMultimer
• OrOperator
• AndOperator
• NotOperator
• DelayOperator